Genes2Genes

https://teichlab.github.io/Genes2Genes/

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Genes2Genes (G2G) is a Python framework for aligning single-cell pseudotime trajectories of gene...

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### Install Genes2Genes

Source: https://teichlab.github.io/Genes2Genes/_sources/index.rst.txt

Installation command for the G2G package from the GitHub repository.

```shell
pip install git+https://github.com/Teichlab/Genes2Genes.git
```

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### Representing Trajectory Alignment as a 5-State String

Source: https://teichlab.github.io/Genes2Genes/_sources/index.rst.txt

Example of a 5-state alignment string representing matches and mismatches between two trajectories.

```text
IIIMMMWWWIIIDDDMMMIIIIDDDD
```

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### Gene-Level Alignment String Example

Source: https://teichlab.github.io/Genes2Genes/_sources/index.rst.txt

Example of a gene-level alignment string for the JUNB gene in T cell differentiation.

```text
IIIIIDMMMMMMMMIDDDDD
```

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