SMETANA

https://smetana.readthedocs.io/en/latest/

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SMETANA is a computational tool for analyzing cross-feeding interactions and metabolic resource...

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### Install SMETANA using pip

Source: https://smetana.readthedocs.io/en/latest/installation.html

Use this command to install SMETANA and its dependencies via pip. Ensure you have Python 2.7 or 3.6 installed.

```bash
$ pip install smetana

```

--------------------------------

### Install Smetana using pip

Source: https://smetana.readthedocs.io/en/latest/_sources/installation.rst.txt

Use this command to install the Smetana package and its dependencies via pip. Ensure you have Python 2.7 or 3.6 installed.

```console
$ pip install smetana
```

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### Access SMETANA help

Source: https://smetana.readthedocs.io/en/latest/usage.html

Display the command-line help menu for detailed usage instructions.

```bash
$ smetana -h
```

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### Specify medium composition

Source: https://smetana.readthedocs.io/en/latest/usage.html

Test communities against specific media by providing a list of media names and a database file.

```bash
$ smetana *.xml -m M9,LB --mediadb library.tsv
```

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### Run SMETANA on multiple communities

Source: https://smetana.readthedocs.io/en/latest/usage.html

Use a tab-separated file to define community compositions when analyzing multiple communities simultaneously.

```bash
$ smetana *.xml -c communities.tsv
```

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### Run SMETANA on Single Community

Source: https://smetana.readthedocs.io/en/latest/_sources/usage.rst.txt

Use this command to run SMETANA on a single community by providing a list of SBML model files.

```console
$ smetana species1.xml species2.xml ...
```

```console
$ smetana *.xml
```

--------------------------------

### Run SMETANA on a single community

Source: https://smetana.readthedocs.io/en/latest/usage.html

Execute SMETANA by providing a list of SBML files representing species in a single community.

```bash
$ smetana species1.xml species2.xml ...

$ smetana *.xml
```

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