### Getkmers example

Source: https://propy3.readthedocs.io/en/latest/AAComposition.html

Example usage of Getkmers, which returns a list of 8000 tri-peptides (3-mers).

```python
>>> result = Getkmers()
```

--------------------------------

### CalculateTransition example

Source: https://propy3.readthedocs.io/en/latest/CTD.html

Retrieves a protein sequence from UniProt and computes transition descriptors based on a given amino acid property. The example uses _Hydrophobicity as the property and its name as the AAPName.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> AAProperty, AAPName = _Hydrophobicity, "_Hydrophobicity"
>>> result = CalculateTransition(protein, AAProperty, AAPName)
```

--------------------------------

### GetQSO example: compute quasi sequence order descriptors

Source: https://propy3.readthedocs.io/en/latest/_modules/propy/PyPro.html

Example from the GetQSO method docstring. Retrieves a protein sequence and computes quasi sequence order descriptors with default maxlag=30 and weight=0.1.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetProDes(protein).GetQSO(maxlag=30, weight=0.1)
```

--------------------------------

### CalculateAADipeptideComposition example

Source: https://propy3.readthedocs.io/en/latest/_modules/propy/AAComposition.html

Example from the module docstring: retrieves a protein sequence from UniProt using GetProteinSequence and calculates amino acid and dipeptide composition with CalculateAADipeptideComposition.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateAADipeptideComposition(protein)
```

--------------------------------

### CalculateTransitionSolventAccessibility example

Source: https://propy3.readthedocs.io/en/latest/_modules/propy/CTD.html

Example usage of CalculateTransitionSolventAccessibility: fetch a protein sequence from UniProt and compute Transition descriptors based on SolventAccessibility.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateTransitionSolventAccessibility(protein)
```

--------------------------------

### GetSpectrumDict example

Source: https://propy3.readthedocs.io/en/latest/AAComposition.html

Example usage of GetSpectrumDict, which calculates the spectrum descriptors of 3-mers for a given protein sequence, returning composition values of 8000 3-mers. It fetches the protein sequence from UniProt and then calls the function.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetSpectrumDict(protein)
```

--------------------------------

### CalculateTransitionSecondaryStr example

Source: https://propy3.readthedocs.io/en/latest/_modules/propy/CTD.html

Example usage of CalculateTransitionSecondaryStr: fetch a protein sequence from UniProt and compute Transition descriptors based on SecondaryStr.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateTransitionSecondaryStr(protein)
```

--------------------------------

### CalculateTransitionNormalizedVDWV example

Source: https://propy3.readthedocs.io/en/latest/_modules/propy/CTD.html

Example usage of CalculateTransitionNormalizedVDWV: fetch a protein sequence from UniProt and compute Transition descriptors based on NormalizedVDWV.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateTransitionNormalizedVDWV(protein)
```

--------------------------------

### CalculateDipeptideComposition example

Source: https://propy3.readthedocs.io/en/latest/AAComposition.html

Example usage of CalculateDipeptideComposition, which calculates the composition of 400 dipeptides for a given protein sequence. It fetches the protein sequence from UniProt and then calls the function.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateDipeptideComposition(protein)
```

--------------------------------

### GetSubSequence usage example

Source: https://propy3.readthedocs.io/en/latest/GetSubSeq.html

Shows how to call GetSubSequence after retrieving a protein sequence from UniProt using GetProteinSequence. The example uses the default parameters (ToAA='S', window=3) and prints the resulting list of sub-sequences.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetSubSequence(protein)
```

--------------------------------

### GetCTD Example: Compute CTD Descriptors

Source: https://propy3.readthedocs.io/en/latest/_modules/propy/PyPro.html

Example usage for the GetCTD method, which calculates Composition, Transition, and Distribution descriptors. It fetches a protein sequence from UniProt and calls GetCTD().

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetProDes(protein).GetCTD()
```

--------------------------------

### GetPAACp Example: Compute PAAC with Custom Properties

Source: https://propy3.readthedocs.io/en/latest/_modules/propy/PyPro.html

Example usage for the GetPAACp method, which computes Type I pseudo amino acid composition descriptors for given properties. It passes an empty AAP list.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetProDes(protein).GetPAACp(lamda=10, weight=0.05, AAP=[])
```

--------------------------------

### GetAPAAC Example: Compute Amphiphilic Pseudo Amino Acid Composition

Source: https://propy3.readthedocs.io/en/latest/_modules/propy/PyPro.html

Example usage for the GetAPAAC method, which computes Amphiphilic (Type II) pseudo amino acid composition descriptors. It uses lamda=10 and weight=0.5.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetProDes(protein).GetAPAAC(lamda=10, weight=0.5)
```

--------------------------------

### CalculateT example

Source: https://propy3.readthedocs.io/en/latest/CTD.html

Retrieves a protein sequence from UniProt and computes all transition descriptors based on seven different properties of amino acids. The result is a dictionary containing the descriptors.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateT(protein)
```

--------------------------------

### GetAAindex23(name) example

Source: https://propy3.readthedocs.io/en/latest/PyPro.html

Gets amino acid property values from aaindex2 and aaindex3. Requires a property name such as 'KRIW790103'.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetProDes(protein).GetAAindex23(name="KRIW790103")

```

--------------------------------

### get(key: str)

Source: https://propy3.readthedocs.io/en/latest/AAIndex.html

Get record for key.

```APIDOC
## get(key: str)

### Description
Get record for key.

### Method
Function

### Signature
`propy.AAIndex.get(key: str)`

### Parameters
- **key** (str) - Required - the key of the record to retrieve

### Returns
- The record associated with the key.
```

--------------------------------

### Example: _GetPseudoAAC usage

Source: https://propy3.readthedocs.io/en/latest/_modules/propy/PseudoAAC.html

Shows how to use the _GetPseudoAAC function with a protein sequence from Uniprot.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = _GetPseudoAAC(protein)
```

--------------------------------

### Install propy3 with pip

Source: https://propy3.readthedocs.io/en/latest/UserGuide.html

Install the propy3 package using pip.

```bash
pip install propy3

```

--------------------------------

### CalculateDistribution example usage

Source: https://propy3.readthedocs.io/en/latest/_modules/propy/CTD.html

Example from the docstring of CalculateDistribution, showing how to compute distribution descriptors for a protein sequence.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> AAProperty, AAPName = _Hydrophobicity, "_Hydrophobicity"
>>> result = CalculateDistribution(protein, AAProperty, AAPName)
```

--------------------------------

### GetAAComposition example

Source: https://propy3.readthedocs.io/en/latest/PseudoAAC.html

Shows how to compute the amino acid composition of a protein sequence using GetAAComposition. It fetches a protein sequence from UniProt and then calls the function.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetAAComposition(protein)
```

--------------------------------

### CalculateNormalizedMoreauBrotoAutoSteric example

Source: https://propy3.readthedocs.io/en/latest/Autocorrelation.html

Example usage of CalculateNormalizedMoreauBrotoAutoSteric. It fetches the protein sequence for UniProt ID Q9NQ39 and computes the descriptors.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateNormalizedMoreauBrotoAutoSteric(protein)
```

--------------------------------

### CalculateNormalizedMoreauBrotoAutoResidueVol example

Source: https://propy3.readthedocs.io/en/latest/Autocorrelation.html

Example usage of CalculateNormalizedMoreauBrotoAutoResidueVol. It fetches the protein sequence for UniProt ID Q9NQ39 and computes the descriptors.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateNormalizedMoreauBrotoAutoResidueVol(protein)
```

--------------------------------

### Example: Compute quasi-sequence-order descriptors with GetQuasiSequenceOrderp

Source: https://propy3.readthedocs.io/en/latest/QuasiSequenceOrder.html

Shows how to use GetQuasiSequenceOrderp to compute quasi-sequence-order descriptors for a protein sequence retrieved from UniProt. Requires the propy.GetProteinFromUniprot module and a valid UniProt ID.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetQuasiSequenceOrderp(protein)
```

--------------------------------

### CalculateNormalizedMoreauBrotoAutoResidueASA example

Source: https://propy3.readthedocs.io/en/latest/Autocorrelation.html

Example usage of CalculateNormalizedMoreauBrotoAutoResidueASA. It fetches the protein sequence for UniProt ID Q9NQ39 and computes the descriptors.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateNormalizedMoreauBrotoAutoResidueASA(protein)
```

--------------------------------

### Compute quasi-sequence-order descriptors with GetQuasiSequenceOrder1Grant

Source: https://propy3.readthedocs.io/en/latest/QuasiSequenceOrder.html

Example usage: fetch a protein sequence from UniProt using GetProteinSequence and compute the first 20 quasi-sequence-order descriptors with GetQuasiSequenceOrder1Grant. Requires the propy package and a valid UniProt ID.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetQuasiSequenceOrder1Grant(protein)
```

--------------------------------

### CalculateNormalizedMoreauBrotoAutoPolarizability example

Source: https://propy3.readthedocs.io/en/latest/Autocorrelation.html

Example usage of CalculateNormalizedMoreauBrotoAutoPolarizability. It fetches the protein sequence for UniProt ID Q9NQ39 and computes the descriptors.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateNormalizedMoreauBrotoAutoPolarizability(protein)
```

--------------------------------

### Download multiple protein sequences from file using GetProteinSequenceFromTxt

Source: https://propy3.readthedocs.io/en/latest/UserGuide.html

Downloads protein sequences from Uniprot by providing a file containing Uniprot IDs. The example uses 'propy/data' as directory and 'target.txt' as input file, saving results to 'target1.txt'.

```python
from propy.GetProteinFromUniprot import GetProteinSequenceFromTxt as gpst

tag = gpst("propy/data", "target.txt", "target1.txt")

```

--------------------------------

### CalculateDistributionNormalizedVDWV example

Source: https://propy3.readthedocs.io/en/latest/_modules/propy/CTD.html

Example usage of CalculateDistributionNormalizedVDWV: fetch a protein sequence from UniProt and compute Distribution descriptors based on NormalizedVDWV.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateDistributionNormalizedVDWV(protein)
```

--------------------------------

### CalculateDistributionHydrophobicity example

Source: https://propy3.readthedocs.io/en/latest/_modules/propy/CTD.html

Example usage of CalculateDistributionHydrophobicity: fetch a protein sequence from UniProt and compute Distribution descriptors based on Hydrophobicity.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateDistributionHydrophobicity(protein)
```

--------------------------------

### CalculateTransitionPolarizability example

Source: https://propy3.readthedocs.io/en/latest/_modules/propy/CTD.html

Example usage of CalculateTransitionPolarizability: fetch a protein sequence from UniProt and compute Transition descriptors based on Polarizability.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateTransitionPolarizability(protein)
```

--------------------------------

### GetDPComp() example

Source: https://propy3.readthedocs.io/en/latest/PyPro.html

Computes dipeptide composition descriptors (400).

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetProDes(protein).GetDPComp()

```

--------------------------------

### CalculateTransitionCharge example

Source: https://propy3.readthedocs.io/en/latest/CTD.html

Retrieves a protein sequence from UniProt and computes Transition descriptors based on Charge. The result is a dictionary containing the descriptors.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateTransitionCharge(protein)
```

--------------------------------

### GetCTD() example

Source: https://propy3.readthedocs.io/en/latest/PyPro.html

Computes Composition Transition Distribution descriptors (147).

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetProDes(protein).GetCTD()

```

--------------------------------

### GetAAComp() example

Source: https://propy3.readthedocs.io/en/latest/PyPro.html

Computes amino acid composition descriptors (20). Uses GetProteinSequence to fetch a protein sequence from UniProt by ID.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetProDes(protein).GetAAComp()

```

--------------------------------

### CalculateTransitionPolarity example

Source: https://propy3.readthedocs.io/en/latest/_modules/propy/CTD.html

Example usage of CalculateTransitionPolarity: fetch a protein sequence from UniProt and compute Transition descriptors based on Polarity.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateTransitionPolarity(protein)
```

--------------------------------

### CalculateTransitionNormalizedVDWV example

Source: https://propy3.readthedocs.io/en/latest/CTD.html

Computes transition descriptors based on the NormalizedVDWV property of amino acids. Requires a pure protein sequence string and returns a dictionary of descriptor values.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateTransitionNormalizedVDWV(protein)

```

--------------------------------

### Example usage of GetPseudoAAC

Source: https://propy3.readthedocs.io/en/latest/_modules/propy/PseudoAAC.html

Shows how to use the GetPseudoAAC function: import GetProteinSequence, fetch a protein sequence by its Uniprot ID, and compute the PseAA descriptors.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetPseudoAAC(protein)
```

--------------------------------

### CalculateAutoTotal example

Source: https://propy3.readthedocs.io/en/latest/Autocorrelation.html

Example usage of CalculateAutoTotal to compute all autocorrelation descriptors for a protein sequence. It fetches a protein sequence from UniProt and calls the function.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateGearyAutoTotal(protein)
```

--------------------------------

### CalculateTransitionSolventAccessibility example

Source: https://propy3.readthedocs.io/en/latest/CTD.html

Computes transition descriptors based on the SolventAccessibility property of amino acids. Requires a pure protein sequence string and returns a dictionary of descriptor values.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateTransitionSolventAccessibility(protein)

```

--------------------------------

### CalculateNormalizedMoreauBrotoAutoTotal example

Source: https://propy3.readthedocs.io/en/latest/Autocorrelation.html

Example usage of CalculateNormalizedMoreauBrotoAutoTotal. It fetches the protein sequence for UniProt ID Q9NQ39 and computes 240 descriptors based on 8 properties.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateNormalizedMoreauBrotoAutoTotal(protein)
```

--------------------------------

### GetAPseudoAAC example

Source: https://propy3.readthedocs.io/en/latest/PseudoAAC.html

Shows how to compute type II pseudo amino acid composition descriptors using GetAPseudoAAC. It fetches a protein sequence and then calls the function with default parameters.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetAPseudoAAC(protein)
```

--------------------------------

### CalculateGearyAutoSteric example

Source: https://propy3.readthedocs.io/en/latest/Autocorrelation.html

Example for the CalculateGearyAutoSteric function, which calculates Geary Autocorrelation descriptors based on Steric. It retrieves a protein sequence from UniProt and calls the function.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateGearyAutoSteric(protein)
```

--------------------------------

### CalculateTransitionSecondaryStr example

Source: https://propy3.readthedocs.io/en/latest/CTD.html

Computes transition descriptors based on the SecondaryStr property of amino acids. Requires a pure protein sequence string and returns a dictionary of descriptor values.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateTransitionSecondaryStr(protein)

```

--------------------------------

### CalculateGearyAutoResidueVol example

Source: https://propy3.readthedocs.io/en/latest/Autocorrelation.html

Example for the CalculateGearyAutoResidueVol function, which calculates Geary Autocorrelation descriptors based on ResidueVol. It retrieves a protein sequence from UniProt and calls the function.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateGearyAutoResidueVol(protein)
```

--------------------------------

### CalculateGearyAutoResidueASA example

Source: https://propy3.readthedocs.io/en/latest/Autocorrelation.html

Example for the CalculateGearyAutoResidueASA function, which calculates Geary Autocorrelation descriptors based on ResidueASA. It retrieves a protein sequence from UniProt and calls the function.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateGearyAutoResidueASA(protein)
```

--------------------------------

### CalculateGearyAutoPolarizability example

Source: https://propy3.readthedocs.io/en/latest/Autocorrelation.html

Example for the CalculateGearyAutoPolarizability function, which calculates Geary Autocorrelation descriptors based on Polarizability. It retrieves a protein sequence from UniProt and calls the function.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateGearyAutoPolarizability(protein)
```

--------------------------------

### CalculateGearyAutoMutability example

Source: https://propy3.readthedocs.io/en/latest/Autocorrelation.html

Example for the CalculateGearyAutoMutability function, which calculates Geary Autocorrelation descriptors based on Mutability. It retrieves a protein sequence from UniProt and calls the function.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateGearyAutoMutability(protein)
```

--------------------------------

### Example: GetSequenceOrderCouplingNumber usage

Source: https://propy3.readthedocs.io/en/latest/QuasiSequenceOrder.html

Shows how to import GetProteinSequence from propy.GetProteinFromUniprot, fetch a protein sequence by its Uniprot ID, and compute the sequence order coupling number.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = GetSequenceOrderCouplingNumber(protein)
```

--------------------------------

### CalculateDistributionSecondaryStr example

Source: https://propy3.readthedocs.io/en/latest/CTD.html

Retrieves a protein sequence from UniProt and computes Distribution descriptors based on SecondaryStr. The result is a dictionary containing the descriptors.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateDistributionSecondaryStr(protein)
```

--------------------------------

### CalculateGearyAutoHydrophobicity example

Source: https://propy3.readthedocs.io/en/latest/Autocorrelation.html

Example for the CalculateGearyAutoHydrophobicity function, which calculates Geary Autocorrelation descriptors based on hydrophobicity. It retrieves a protein sequence from UniProt and calls the function.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateGearyAutoHydrophobicity(protein)
```

--------------------------------

### CalculateGearyAutoFreeEnergy example

Source: https://propy3.readthedocs.io/en/latest/Autocorrelation.html

Example for the CalculateGearyAutoFreeEnergy function, which calculates Geary Autocorrelation descriptors based on FreeEnergy. It retrieves a protein sequence from UniProt and calls the function.

```python
>>> from propy.GetProteinFromUniprot import GetProteinSequence
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
>>> result = CalculateGearyAutoFreeEnergy(protein)
```