### Install SigProfilerAssignment from GitHub Source

Source: https://osf.io/mz79v/wiki

Install SigProfilerAssignment after cloning the GitHub repository. Navigate to the downloaded directory and use pip to install the package. This command is applicable for both Mac/Unix and Windows systems.

```bash
cd SigProfilerAssignment-master
$ pip install .
```

--------------------------------

### Install SigProfilerMatrixGenerator

Source: https://osf.io/mz79v/wiki

Install the SigProfilerMatrixGenerator Python package using pip. This is a prerequisite for downloading reference genomes.

```bash
$ pip install SigProfilerMatrixGenerator
```

--------------------------------

### Install SigProfilerAssignment (Stable Release)

Source: https://osf.io/mz79v/wiki

Install the stable release of SigProfilerAssignment using pip. This command is applicable for both Mac/Unix and Windows systems.

```bash
$ pip install SigProfilerAssignment
```

--------------------------------

### Install Reference Genome from Local Files

Source: https://osf.io/mz79v/wiki

Install a reference genome from a locally saved tar.gz file. Provide the path to the directory containing the genome's tar.gz file using the `offline_files_path` argument.

```python
python
>> from SigProfilerMatrixGenerator import install as genInstall
>> genInstall.install('GRCh37', offline_files_path='path/to/directory/containing/GRCh37.tar.gz')
```

--------------------------------

### Download Reference Genome (GRCh37)

Source: https://osf.io/mz79v/wiki

Download a reference genome (e.g., GRCh37) using SigProfilerMatrixGenerator. Ensure you have Python installed. The `rsync=False` and `bash=True` arguments are used for the installation process.

```python
python
>> from SigProfilerMatrixGenerator import install as genInstall
>> genInstall.install('GRCh37', rsync=False, bash=True)
```

--------------------------------

### Clone SigProfilerAssignment GitHub Repository

Source: https://osf.io/mz79v/wiki

Clone the SigProfilerAssignment GitHub repository to install the latest development version. This command is applicable for both Mac/Unix and Windows systems.

```bash
$ git clone git@github.com:AlexandrovLab/SigProfilerAssignment.git
```

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