### Install Project R Dependencies

Source: https://github.com/rostools/prodigenr/blob/main/inst/templates/projects/basic-analysis/README.md

Installs all R package dependencies listed in the project's DESCRIPTION file using the `pak` package. Ensure `remotes` is installed beforehand.

```r
# install.packages("pak")
pak::pak()
```

--------------------------------

### Install prodigenr from CRAN

Source: https://github.com/rostools/prodigenr/blob/main/README.md

Install the released version of the prodigenr package from CRAN.

```r
install.packages("prodigenr")
```

--------------------------------

### Install prodigenr Development Version from GitHub

Source: https://github.com/rostools/prodigenr/blob/main/README.md

Install the development version of the prodigenr package from GitHub using the pak package.

```r
# install.packages("pak")
pak::pak("rostools/prodigenr")
```

--------------------------------

### Set up a New Project via Console

Source: https://github.com/rostools/prodigenr/blob/main/README.md

Use the `setup_project()` command in the R console to create a new project directory with template files. Open the created project using the .Rproj file.

```r
library(prodigenr)
setup_project("~/Desktop/DiseaseDiet")
```

--------------------------------

### List Available Project Templates

Source: https://github.com/rostools/prodigenr/blob/main/README.md

Use the `template_list` command to see the available template files for project creation.

```r
template_list
#> [1] "report" "slides"
```

--------------------------------

### Create a Report File

Source: https://github.com/rostools/prodigenr/blob/main/README.md

Add a Quarto manuscript/report file to an existing project using the `create_report()` function.

```r
create_report()
```

--------------------------------

### Open prodigenr Vignette

Source: https://github.com/rostools/prodigenr/blob/main/README.md

Access the detailed introduction vignette for prodigenr to learn more about its features and usage.

```r
vignette('prodigenr', 'prodigenr')
```

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