### Example Anchor Kinds Source: https://github.com/imbad0202/academic-research-skills/blob/main/agents/report_compiler_agent.md Illustrates specific examples for different anchor kinds, showing how to format the value for each type. ```text ``` -------------------------------- ### Search for Install Method Mentions Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/design/2026-04-27-ars-v3.6.5.1-setup-fix-implementation-brief.md Use grep to find all mentions of installation methods across the repository to ensure consistency with the updated SETUP.md. ```bash grep -rn -E "Cowork|claude.ai|claude.com/product/cowork|GitHub integration|.claude/skills" \ README.md README.zh-TW.md QUICKSTART.md .claude/CLAUDE.md docs/ \ --exclude-dir=design ``` -------------------------------- ### Plugin Installation Instructions (Markdown) Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/design/2026-04-30-ars-v3.7.0-plugin-packaging-roadmap.md Markdown snippet for the README file, providing dual-track installation instructions for the Claude Code Plugin. ```markdown ## Installation ### Option A: Claude Code Plugin (recommended) ``` /plugin marketplace add Imbad0202/academic-research-skills /plugin install academic-research-skills ``` 建議在 `/plugin` UI 開啟 auto-update，這樣 ARS 每次發新版會自動拉到本地。 ### Option B: Manual clone + symlink (legacy, still supported) [既有的 clone 安裝步驟保留不動] ``` -------------------------------- ### Install Tectonic (Linux) Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/SETUP.md Installs the Tectonic typesetting system on Linux by downloading and executing a script, required for PDF output. ```bash # Linux (Debian/Ubuntu) curl --proto '=https' --tlsv1.2 -fsSL https://drop-sh.fullyjustified.net | sh ``` -------------------------------- ### Install Pandoc (Linux) Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/SETUP.md Installs Pandoc on Debian/Ubuntu-based Linux distributions using apt-get, required for direct DOCX generation. ```bash # Linux (Debian/Ubuntu) sudo apt-get install pandoc ``` -------------------------------- ### Example Synthesis Report Section Source: https://github.com/imbad0202/academic-research-skills/blob/main/shared/handoff_schemas.md Shows an example of a synthesized theme with its strength, supporting, and contradicting sources, along with identified research gaps. ```markdown ## Synthesis ### Theme 1: Immediate Feedback Loop as Primary Mechanism AI-assisted assessment's primary advantage lies in the immediacy of feedback, reducing the gap between student action and corrective input. Multiple studies [S01, S04, S07, S12] converge on feedback latency as the key variable, with effect sizes ranging from d=0.3 to d=0.8. This aligns with Hattie's (2009) feedback framework... **Strength**: Strong (5 sources) **Supporting**: [S01, S04, S07, S12, S15] **Contradicting**: [S09] (argues quality matters more than speed) ### Research Gaps 1. No longitudinal studies (>1 year) in Taiwan context 2. Limited data on AI assessment in laboratory courses ``` -------------------------------- ### Install Academic Research Skills Source: https://github.com/imbad0202/academic-research-skills/blob/main/README.md Install the Academic Research Skills plugin using the Claude Code CLI. This is a quick way to get started with the tool. ```text /plugin marketplace add Imbad0202/academic-research-skills /plugin install academic-research-skills ``` -------------------------------- ### Install Claude Code (Windows) Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/SETUP.md Installs the Claude Code tool using a native installer script for Windows. ```powershell # Windows (PowerShell) irm https://claude.ai/install.ps1 | iex ``` -------------------------------- ### Create Adapter Directory Skeleton Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/design/2026-04-23-ars-v3.6.4-literature-corpus-adapters-plan.md Set up the necessary directory structure for adapter implementations, examples, and tests. ```bash cd ~/Projects/academic-research-skills mkdir -p scripts/adapters/examples/folder_scan/input_fixture mkdir -p scripts/adapters/examples/zotero/input_fixture mkdir -p scripts/adapters/examples/obsidian/input_fixture/vault mkdir -p scripts/adapters/tests mkdir -p academic-pipeline/references/adapters ls -la shared/contracts/passport/ ``` -------------------------------- ### Install Claude Code (macOS/Linux) Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/SETUP.md Installs the Claude Code tool using a native installer script for macOS and Linux. ```bash # macOS / Linux curl -fsSL https://claude.ai/install.sh | bash ``` -------------------------------- ### Create Test and Init Files Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/design/2026-04-23-ars-v3.6.4-literature-corpus-adapters-plan.md Commands to create necessary Python files for the adapter tests, including an empty `__init__.py` for the tests directory. ```bash touch scripts/adapters/__init__.py touch scripts/adapters/tests/__init__.py ``` -------------------------------- ### Verify File Existence and Markdown Rendering Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/design/2026-04-23-ars-v3.6.4-literature-corpus-adapters-plan.md Navigate to the project directory and display the first 50 lines of the adapter overview markdown file to verify its content and rendering. ```bash cd ~/Projects/academic-research-skills cat academic-pipeline/references/adapters/overview.md | head -50 ``` -------------------------------- ### Obsidian Convention A Frontmatter Example Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/design/2026-04-23-ars-v3.6.4-literature-corpus-adapters-design.md Example of frontmatter for Obsidian Convention A, which is preferred and uses a 'citekey' field. ```markdown --- citekey: chen2024ai title: "AI assessment in higher education" authors: - family: Chen given: Cindy year: 2024 venue: "Assessment & Evaluation" doi: "10.1234/xyz" tags: [assessment, ai] --- Note body becomes user_notes (with copyright caveat). ``` -------------------------------- ### Install Tectonic (macOS) Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/SETUP.md Installs the Tectonic typesetting system on macOS using Homebrew, required for PDF output. ```bash # macOS brew install tectonic ``` -------------------------------- ### Cowork Install: Symlink Approach Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/design/2026-04-27-ars-v3.6.5.1-setup-fix-implementation-brief.md This bash script demonstrates the symlink approach for installing Cowork skills. Ensure Cowork is restarted after running this script for the skills to register. ```bash git clone https://github.com/Imbad0202/academic-research-skills.git ~/academic-research-skills mkdir -p ~/.claude/skills cd ~/.claude/skills ln -s ~/academic-research-skills/deep-research deep-research ln -s ~/academic-research-skills/academic-paper academic-paper ln -s ~/academic-research-skills/academic-paper-reviewer academic-paper-reviewer ln -s ~/academic-research-skills/academic-pipeline academic-pipeline ``` -------------------------------- ### Create Obsidian Vault Fixture Files Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/design/2026-04-23-ars-v3.6.4-literature-corpus-adapters-plan.md Bash commands to set up the directory structure and create example Markdown files for the Obsidian adapter tests. This includes creating necessary subdirectories and sample vault entries. ```bash cd ~/Projects/academic-research-skills mkdir -p scripts/adapters/examples/obsidian/input_fixture/vault/_templates mkdir -p scripts/adapters/examples/obsidian/input_fixture/vault/.obsidian rm scripts/adapters/examples/obsidian/input_fixture/vault/.gitkeep ``` -------------------------------- ### Minimal Command Example 2 Source: https://github.com/imbad0202/academic-research-skills/blob/main/academic-paper/SKILL.md Initiates the academic paper writing process with a different topic. ```bash Write a paper on the impact of declining birth rates on private university management strategies ``` -------------------------------- ### APA 7.0 Conference Paper Example Source: https://github.com/imbad0202/academic-research-skills/blob/main/academic-paper/references/apa7_chinese_citation_guide.md Example of a Chinese conference paper citation in APA 7.0 format. ```text Lin, Ba (2024, November). The impact of generative AI on higher education teaching [Conference paper]. 2024 Taiwan Education Academic Conference, Taipei, Taiwan. ``` -------------------------------- ### APA 7.0 Government Report Example Source: https://github.com/imbad0202/academic-research-skills/blob/main/academic-paper/references/apa7_chinese_citation_guide.md Example of a Chinese government report citation in APA 7.0 format. ```text Ministry of Education (2024). Academic Year 113 higher education institution transparency platform statistics. https://udb.moe.edu.tw/ ``` -------------------------------- ### CLI Command for Zotero Adapter Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/design/2026-04-23-ars-v3.6.4-literature-corpus-adapters-design.md Example command to run the zotero adapter, specifying input, passport, and rejection log output paths. Ensure the input path points to a Better BibTeX JSON export. ```bash python scripts/adapters/zotero.py \ --input path/to/export.json \ --passport out/passport.yaml \ --rejection-log out/rejection_log.yaml ``` -------------------------------- ### Example Bundle Manifest Text Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/design/2026-04-30-ars-v3.6.7-step-6-orchestrator-hooks-spec.md An example of the manifest text content, illustrating the format with 'primary', 'supporting', and 'template' roles for different file types. ```text primary:chapter_4/synthesis.md:a1b2c3d4... supporting:chapter_4/bibliography.json:e5f6a7b8... supporting:chapter_4/verification.md:c2d3e4f5... template:shared/templates/codex_audit_multifile_template.md:9a8b7c6d... ``` -------------------------------- ### Guided Mode Phases Source: https://github.com/imbad0202/academic-research-skills/blob/main/academic-paper-reviewer/references/guided_mode_protocol.md Outlines the distinct phases of the Guided Mode execution, from initial analysis to dialogue entry. ```text Phase 0: Normal Field Analysis execution Phase 1: Normal execution of 5 reviews (but not all displayed immediately) Phase 2: Does not produce full Editorial Decision; enters dialogue mode instead ``` -------------------------------- ### Minimal Command Example 1 Source: https://github.com/imbad0202/academic-research-skills/blob/main/academic-paper/SKILL.md Initiates the academic paper writing process with a specific topic. ```bash Write a paper on the impact of AI on higher education quality assurance ``` -------------------------------- ### Download and Extract ZIP for Method 1 or Standalone Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/SETUP.md Alternative installation method for users without Git. Download the ARS project as a ZIP file, extract it, and then follow Method 1 (copying skills) or Method 2 (standalone use). ```text 1. Go to https://github.com/Imbad0202/academic-research-skills 2. Click the green **Code** button → **Download ZIP** 3. Extract the ZIP to your desired location 4. For Method 1: copy the four extracted skill folders (`deep-research`, `academic-paper`, `academic-paper-reviewer`, `academic-pipeline`) into `.claude/skills/` inside your project 5. For standalone use: open a terminal in the extracted folder and run `claude` ``` -------------------------------- ### Install Pandoc (macOS) Source: https://github.com/imbad0202/academic-research-skills/blob/main/docs/SETUP.md Installs Pandoc on macOS using the Homebrew package manager, required for direct DOCX generation. ```bash # macOS brew install pandoc ``` -------------------------------- ### Stage 3 Review Initialization Source: https://github.com/imbad0202/academic-research-skills/blob/main/academic-pipeline/examples/mid_entry_example.md Log output showing the start of the quick review mode. ```text Entering Stage 3 (REVIEW) -- using academic-paper-reviewer quick mode Loading academic-paper-reviewer SKILL.md... Receiving user-provided paper draft... field_analyst_agent analyzing paper domain... eic_agent executing quick assessment... ``` -------------------------------- ### Material Passport Example Source: https://github.com/imbad0202/academic-research-skills/blob/main/shared/handoff_schemas.md An example of a Material Passport showing key metadata like origin, verification status, and dependencies. ```markdown ## Material Passport - Origin Skill: academic-paper - Origin Mode: full - Origin Date: 2026-03-08T14:30:00Z - Verification Status: VERIFIED - Version Label: paper_draft_v2 - Integrity Pass Date: 2026-03-08T15:45:00Z - Content Hash: a3f2b7c9... - Upstream Dependencies: [research_v1, bibliography_v1, synthesis_v1] ```