### GUIDEseq Installed Package Size Note

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

This note indicates that the installed size of the GUIDEseq package is 12.7MB, with the 'extdata' sub-directory being over 1MB.

```R
installed size is 12.7Mb
sub-directories of 1Mb or more:
  extdata  12.0Mb
```

--------------------------------

### Debug Example Execution Failure

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

Error log from a failed example execution due to missing local files.

```R
> eh = ExperimentHub(localHub=TRUE)
Using 'localHub=TRUE'
  If offline, please also see BiocManager vignette section on offline use
> query(eh, "DEqMS")
ExperimentHub with 0 records
# snapshotDate(): 2024-12-19
> dat.psm = eh[["EH1663"]]
Error: File not previously downloaded.
  Run with 'localHub=FALSE'
Execution halted
```

--------------------------------

### Configure R and Install revdepcheck

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/notes.md

Set the number of CPUs and install the necessary package for dependency checking.

```r
> options(Ncpus = 6L)
> install.packages("remotes")
> remotes::install_github("r-lib/revdepcheck")
```

--------------------------------

### GWENA Installation Warnings

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/problems.md

Warnings encountered during the installation check of the GWENA package.

```text
Found the following significant warnings:
  Warning: bad markup (extra space?) at compare_conditions.Rd:91:72
  Warning: bad markup (extra space?) at compare_conditions.Rd:96:77
  Warning: bad markup (extra space?) at compare_conditions.Rd:98:74
  Warning: bad markup (extra space?) at compare_conditions.Rd:100:69
See ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/GWENA/new/GWENA.Rcheck/00install.out’ for details.
```

--------------------------------

### Initialize matrix data

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/colRowCounts

Setup the matrix and target value for benchmarking.

```r
> X <- data[["10x1000"]]
> value <- 42
```

--------------------------------

### Example Execution Failure Log

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

Error log from running package examples, specifically showing a failure to retrieve data from IMGT.

```text
Running examples in ‘immApex-Ex.R’ failed
The error most likely occurred in:

> ### Name: getIMGT
> ### Title: Get IMGT Sequences for Specific Loci
> ### Aliases: getIMGT
> 
> ### ** Examples
> 
> TRBV_aa <- getIMGT(species = "human",
...
+                    sequence.type = "aa", 
+                    max.retries = 3) 
Data from IMGT is under a CC BY-NC-ND 4.0 license. Attribution is required.
Getting sequences from IMGT...
Attempt 1 failed. Retrying...
Attempt 2 failed. Retrying...
Attempt 3 failed. Retrying...
Error in getIMGT(species = "human", chain = "TRB", frame = "inframe",  : 
  Failed to retrieve data after 3 attempts.
Execution halted
```

--------------------------------

### Initialize simulation data

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/binMeans_subset

Setup random vectors and bin boundaries for benchmarking.

```r
> nx <- 1e+05
> set.seed(48879)
> x <- runif(nx, min = 0, max = 1)
> y <- runif(nx, min = 0, max = 1)
> nb <- 1000
> bx <- seq(from = 0, to = 1, length.out = nb + 1L)
> bx <- c(-1, bx, 2)
> idxs <- sample.int(length(x), size = length(x) * 0.7)
```

--------------------------------

### Installed Package Size Note

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

Report on the disk usage of the installed package.

```text
installed size is 21.6Mb
  sub-directories of 1Mb or more:
    data   1.6Mb
    libs  19.6Mb
```

--------------------------------

### Initialize 10x10 Matrix Data

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/colRowCounts

Setup the matrix and target value for benchmarking.

```r
> X <- data[["10x10"]]
> value <- 42
```

--------------------------------

### Report installed package size

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/problems.md

Provides a breakdown of the installed package size, highlighting sub-directories exceeding 1Mb.

```text
  installed size is  6.1Mb
  sub-directories of 1Mb or more:
    data   3.7Mb
    doc    1.6Mb
```

--------------------------------

### Check Installed Package Size

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

This note reports the installed size of the package and highlights sub-directories exceeding 1MB. Review the 'doc' and 'libs' directories for potential optimization.

```text
installed size is 14.6Mb
sub-directories of 1Mb or more:
  doc    4.1Mb
  libs   9.9Mb
```

--------------------------------

### Check installed package size

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

Diagnostic output showing the total installed size and sub-directory breakdown.

```text
  installed size is 12.4Mb
  sub-directories of 1Mb or more:
    doc  11.2Mb
```

--------------------------------

### Initialize 100x100 matrix data

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/colRowCounts

Setup the matrix and target value for benchmarking.

```r
> X <- data[["100x100"]]
> value <- 42
```

--------------------------------

### Initialize Matrix Data

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/colRowCounts_subset

Setup a 10x1000 matrix and define subsets for benchmarking.

```r
> X <- data[["10x1000"]]
> rows <- sample.int(nrow(X), size = nrow(X) * 0.7)
> cols <- sample.int(ncol(X), size = ncol(X) * 0.7)
> X_S <- X[rows, cols]
> value <- 42
```

--------------------------------

### Check Installed Package Size

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

This note reports the installed size of the package and lists sub-directories that occupy 1MB or more. It helps in identifying large components of the package.

```text
installed size is  6.1Mb
sub-directories of 1Mb or more:
  data   3.7Mb
  doc    1.6Mb
```

--------------------------------

### Installed Package Size Check Notes

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

Notes from checking installed package size, indicating sub-directories exceeding 1MB.

```R
  installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc    3.5Mb
    libs   1.4Mb
```

--------------------------------

### Check Installed Package Size

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/problems.md

This note indicates the installed size of the package and lists sub-directories exceeding 1MB. It is useful for understanding package footprint.

```text
installed size is 13.5Mb
sub-directories of 1Mb or more:
  doc   10.4Mb
  help   1.1Mb
```

--------------------------------

### Package Size Report

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/problems.md

Summary of installed package size and sub-directory distribution.

```text
  installed size is  9.4Mb
  sub-directories of 1Mb or more:
    extdata   8.5Mb
```

```text
  installed size is  8.8Mb
  sub-directories of 1Mb or more:
    data   1.9Mb
    doc    2.6Mb
    libs   4.0Mb
```

--------------------------------

### Package Size Report

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/problems.md

A summary of the installed package size and its sub-directories.

```text
  installed size is 13.3Mb
  sub-directories of 1Mb or more:
    data   1.8Mb
    libs  11.1Mb
```

--------------------------------

### Package size diagnostic

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/problems.md

Notes regarding the installed size of package sub-directories.

```text
  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    doc   5.2Mb
```

```text
  installed size is 11.9Mb
  sub-directories of 1Mb or more:
    data   2.1Mb
    doc    6.6Mb
    libs   2.3Mb
```

```text
  installed size is  5.7Mb
  sub-directories of 1Mb or more:
    doc   5.5Mb
```

```text
  installed size is  5.2Mb
  sub-directories of 1Mb or more:
    data   3.5Mb
```

```text
  installed size is 101.5Mb
  sub-directories of 1Mb or more:
    libs  99.5Mb
```

--------------------------------

### Installed package size note

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/problems.md

Reports when a package or its sub-directories exceed 1Mb in size.

```text
  installed size is  7.0Mb
  sub-directories of 1Mb or more:
    libs   5.3Mb
```

```text
  installed size is 10.3Mb
  sub-directories of 1Mb or more:
    doc   9.4Mb
```

```text
  installed size is 20.3Mb
  sub-directories of 1Mb or more:
    R      2.3Mb
    doc    6.1Mb
    libs  10.8Mb
```

```text
  installed size is  5.0Mb
  sub-directories of 1Mb or more:
    doc   4.7Mb
```

--------------------------------

### Initialize matrix data for benchmarking

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/colRowCounts

Sets up the matrix and target value used in subsequent performance tests.

```r
> X <- data[["1000x100"]]
> value <- 42
```

--------------------------------

### Install matrixStats package

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/README.md

Install the package from CRAN or the development branch on GitHub.

```r
install.packages("matrixStats")
```

```r
remotes::install_github("HenrikBengtsson/matrixStats", ref="develop")
```

--------------------------------

### Initialize matrix index sets

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/indexByRow

Prepares a list of index sets for benchmarking against a 100x1000 matrix.

```r
> X <- data[["100x1000"]]
> dim <- dim(X)
> idxsList <- list(`all-by-NULL` = NULL, all = seq_len(prod(dim)), odd = seq(from = 1, to = prod(dim), 
+     by = 2L))
> str(idxsList)
```

--------------------------------

### Check Installed Package Size

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

Reports on the installed size of a package, highlighting sub-directories that exceed 1MB.

```text
  installed size is 27.1Mb
  sub-directories of 1Mb or more:
    R      1.1Mb
    libs  25.5Mb
```

--------------------------------

### Initialize Benchmark Data

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/indexByRow

Sets up the initial data structure for benchmarking.

```r
> data <- rmatrices(mode = "index")
```

--------------------------------

### Execute findEnhancers example

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

Example usage of the findEnhancers function that triggers a sequence style consistency error.

```R
>   data("myPeakList")
>   findEnhancers(myPeakList[500:1000], annoData, DNAinteractiveData)
```

--------------------------------

### Initialize data and index lists for 10x1000 matrix

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/indexByRow

Prepares a 10x1000 matrix and defines various index sets ('all-by-NULL', 'all', 'odd') for benchmarking purposes.

```r
> X <- data(("10x1000"))
> dim <- dim(X)
> idxsList <- list(`all-by-NULL` = NULL, all = seq_len(prod(dim)), odd = seq(from = 1, to = prod(dim), 
+     by = 2L))
> str(idxsList)
```

--------------------------------

### Installed package size diagnostic

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

Reports on the total size of the installed package and identifies sub-directories exceeding 1MB.

```text
installed size is  7.1Mb
  sub-directories of 1Mb or more:
    libs   5.3Mb
```

```text
installed size is 10.3Mb
  sub-directories of 1Mb or more:
    doc   9.4Mb
```

```text
installed size is 20.3Mb
  sub-directories of 1Mb or more:
    R      2.3Mb
    doc    6.1Mb
    libs  10.8Mb
```

```text
installed size is  5.0Mb
  sub-directories of 1Mb or more:
    doc   4.7Mb
```

--------------------------------

### Initialize index sets for benchmarking

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/indexByRow

Sets up the dimensions and list of index sets used for testing performance.

```r
> X <- data[["1000x100"]]
> dim <- dim(X)
> idxsList <- list(`all-by-NULL` = NULL, all = seq_len(prod(dim)), odd = seq(from = 1, to = prod(dim), 
+     by = 2L))
> str(idxsList)
```

--------------------------------

### Prepare Matrix Data for Benchmarking

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/colRowCounts_subset

Initializes a 1000x10 matrix and selects random rows and columns for testing.

```r
> X <- data[["1000x10"]]
> rows <- sample.int(nrow(X), size = nrow(X) * 0.7)
> cols <- sample.int(ncol(X), size = ncol(X) * 0.7)
> X_S <- X[rows, cols]
> value <- 42
```

--------------------------------

### Package Installation Warnings

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/problems.md

Log output showing namespace import conflicts during package loading.

```text
Found the following significant warnings:
  Warning: replacing previous import ‘ggplot2::%+%’ by ‘psych::%+%’ when loading ‘DeMixT’
  Warning: replacing previous import ‘SummarizedExperiment::distance’ by ‘psych::distance’ when loading ‘DeMixT’
  Warning: replacing previous import ‘ggplot2::alpha’ by ‘psych::alpha’ when loading ‘DeMixT’
See ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/DeMixT/new/DeMixT.Rcheck/00install.out’ for details.
```

--------------------------------

### Check Installed Package Size

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

This snippet shows the output of a check for installed package size, indicating the total size and sub-directory sizes.

```text
installed size is  5.7Mb
sub-directories of 1Mb or more:
  libs   3.7Mb
```

--------------------------------

### Package Size Check Note

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/problems.md

Log output detailing the installed size of the package and its sub-directories.

```text
  installed size is 27.9Mb
  sub-directories of 1Mb or more:
    R         1.0Mb
    data     12.6Mb
    doc       6.8Mb
    extdata   7.2Mb
```

--------------------------------

### Example Execution Failure in ChIPpeakAnno

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/problems.md

Log output showing a failure during the execution of the findEnhancers example due to inconsistent sequence name styles.

```text
>   data("myPeakList")
>   findEnhancers(myPeakList[500:1000], annoData, DNAinteractiveData)
Error in findEnhancers(myPeakList[500:1000], annoData, DNAinteractiveData) :
  length(intersect(seqlevelsStyle(peaks), seqlevelsStyle(annoData))) >  .... is not TRUE
Calls: findEnhancers -> stopifnot
Execution halted
```

--------------------------------

### GUIDEseq Installed Size Note

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/problems.md

Diagnostic note regarding the disk space usage of the GUIDEseq package.

```text
  installed size is 12.7Mb
  sub-directories of 1Mb or more:
    extdata  12.0Mb
```

--------------------------------

### R Package Installed Size Note

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

This note indicates that the installed size of the netZooR package is 6.0MB, with 'data' and 'extdata' sub-directories exceeding 1MB.

```text
installed size is  6.0Mb
sub-directories of 1Mb or more:
  data      1.5Mb
  extdata   2.9Mb
```

--------------------------------

### Reproduce Report with Benchmark

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/mean2

Run this R command to reproduce the report by executing the 'mean2' benchmark.

```r
html <- matrixStats:::benchmark('mean2')
```

--------------------------------

### GUniFrac Installed Package Size Note

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

This note indicates that the installed size of the GUniFrac package is 6.6MB, with 'doc' and 'libs' sub-directories exceeding 1MB.

```R
installed size is  6.6Mb
sub-directories of 1Mb or more:
  doc    3.5Mb
  libs   2.5Mb
```

--------------------------------

### Check Installed Package Size (causalOT)

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

This note provides the installed size of the causalOT package, highlighting that the 'R' and 'libs' sub-directories exceed 1MB.

```R
installed size is  8.9Mb
sub-directories of 1Mb or more:
  R      1.6Mb
  libs   6.7Mb
```

--------------------------------

### Reproduce Report with matrixStats Benchmark

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/binCounts

Run this R command to reproduce the report by executing the matrixStats benchmark for 'binCounts'.

```r
html <- matrixStats:::benchmark('binCounts')
```

--------------------------------

### Check Package Installation Status

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/failures.md

This output indicates that the 'flowWorkspace' package failed to install. Refer to the specified log file for detailed error messages.

```text
Installation failed.
See ‘/c4/home/henrik/repositories/matrixStats/revdep/checks/flowWorkspace/new/flowWorkspace.Rcheck/00install.out’ for details.
```

--------------------------------

### Package Dependency and Startup Diagnostics

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/problems.md

Notes regarding excessive package dependencies and non-suppressible startup messages.

```R
Depends: includes the non-default packages:
  'BiocGenerics', 'graph', 'Biobase', 'GO.db', 'AnnotationDbi',
  'SparseM'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
```

```R

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
```

--------------------------------

### Package Size Note

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/problems.md

This note indicates the installed size of the package and highlights sub-directories that exceed 1MB, suggesting potential areas for optimization.

```text
installed size is  6.1Mb
sub-directories of 1Mb or more:
  doc   5.7Mb
```

--------------------------------

### Check Installed Package Size

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

Reports the installed size of a package and lists sub-directories exceeding 1MB. Useful for identifying large data or library components.

```text
installed size is  8.6Mb
      sub-directories of 1Mb or more:
        data   2.0Mb
        libs   5.7Mb
```

```text
installed size is 916.9Mb
      sub-directories of 1Mb or more:
        data  903.6Mb
        doc    13.2Mb
```

```text
installed size is  7.5Mb
      sub-directories of 1Mb or more:
        R         1.0Mb
        extdata   1.5Mb
        shiny     3.0Mb
```

--------------------------------

### Prepare 1000x100 Matrix for Benchmarking

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/colRowCounts_subset

This code prepares a 1000x100 matrix 'X' and then creates a subset 'X_S' by randomly selecting 70% of rows and columns. It also defines a value to be counted.

```r
> X <- data(("1000x100"))
> rows <- sample.int(nrow(X), size = nrow(X) * 0.7)
> cols <- sample.int(ncol(X), size = ncol(X) * 0.7)
> X_S <- X[rows, cols]
> value <- 42
```

--------------------------------

### Gviz Installed Package Size Note

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

This note indicates that the installed size of the Gviz package is 10.5MB, with 'R', 'doc', and 'extdata' sub-directories exceeding 1MB.

```R
installed size is 10.5Mb
sub-directories of 1Mb or more:
  R         1.7Mb
  doc       5.4Mb
  extdata   2.5Mb
```

--------------------------------

### Check Installed Package Size (celda)

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

This note details the installed size of the celda package, noting that the 'R', 'doc', and 'libs' sub-directories are larger than 1MB.

```R
installed size is 15.5Mb
sub-directories of 1Mb or more:
  R      1.0Mb
  doc    3.5Mb
  libs  10.2Mb
```

--------------------------------

### Initialize Benchmark Data

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/colRowAnys

Creates a list of logical matrices with different dimensions for benchmarking purposes. This setup is used to test the performance of matrix operations.

```r
data <- rmatrices(mode = "logical")
```

--------------------------------

### Check Installed Package Size (CATALYST)

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

This note details the installed size of the CATALYST package, specifying the size of its 'data' and 'doc' sub-directories, both of which exceed 1MB.

```R
installed size is 15.7Mb
sub-directories of 1Mb or more:
  data   3.1Mb
  doc   11.2Mb
```

--------------------------------

### Reproduce Report

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/varDiff_subset

This R code snippet demonstrates how to reproduce the report by running the matrixStats:::benchmark function. Ensure the matrixStats package is installed.

```r
html <- matrixStats:::benchmark('varDiff_subset')
```

--------------------------------

### Check Installed Package Size for vsclust

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

Reports the installed size of the vsclust package, highlighting sub-directories that exceed 1MB. This check is useful for understanding package footprint.

```R
installed size is  8.5Mb
sub-directories of 1Mb or more:
  doc    4.7Mb
  libs   1.9Mb
```

--------------------------------

### Seurat Installed Package Size

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

This note reports the installed size of the Seurat package (16.0Mb), highlighting sub-directories that exceed 1Mb: R (1.7Mb) and libs (13.4Mb).

```R
installed size is 16.0Mb
sub-directories of 1Mb or more:
  R      1.7Mb
  libs  13.4Mb
```

--------------------------------

### Prepare Data for Benchmarking

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/colRowCounts

Loads a 1000x10 matrix named 'X' and defines a value for comparison.

```r
> X <- data[["1000x10"]]
> value <- 42
```

--------------------------------

### Reproduce Report with Benchmark

Source: https://github.com/henrikbengtsson/matrixstats/wiki/reports/colRowWeightedMedians_subset

Run the benchmark for 'colRowWeightedMedians_subset' to reproduce the report. Requires the matrixStats package.

```r
html <- matrixStats:::benchmark('colRowWeightedMedians_subset')
```

--------------------------------

### seqArchR Example Execution Error

Source: https://github.com/henrikbengtsson/matrixstats/blob/develop/revdep/R_MATRIXSTATS_TIES_METHOD_MISSING=defunct/problems.md

This error occurred during the execution of examples for the seqArchR package, specifically related to a Python module import failure ('sklearn') when using BiocParallel.

```R
Running examples in ‘seqArchR-Ex.R’ failed
The error most likely occurred in:

> ### Name: seqArchR
> ### Title: seqArchR: A package for de novo discovery of different sequence
> ###   architectures
> ### Aliases: seqArchR
> 
> ### ** Examples
> 
... 
── Outer chunk 1 of 1 [Size: 200] ──

── Inner chunk 1 of 2 [Size: 100] 
Error: BiocParallel errors
  2 remote errors, element index: 1, 51
  98 unevaluated and other errors
  first remote error:
Error in py_run_file_impl(file, local, convert): ModuleNotFoundError: No module named 'sklearn'
Run `reticulate::py_last_error()` for details.
Execution halted
```