### Install Dependencies Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/scripts/replay/README.md Install the necessary Python packages for the replay script. ```bash pip install -r scripts/replay/requirements.txt ``` -------------------------------- ### IsolationForest warm_start documentation example Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/scikit-learn__scikit-learn-13496_2024-04-06_12-38-05/problem_statement.txt This is an example of how the `warm_start` parameter is documented for `RandomForestClassifier` and could be applied to `IsolationForest`. ```python warm_start : bool, optional (default=False) When set to ``True``, reuse the solution of the previous call to fit and add more estimators to the ensemble, otherwise, just fit a whole new forest. See :term:`the Glossary `. ``` -------------------------------- ### SymPy Version and Import Statement Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-val-only/matched_but_empty_origin/sympy__sympy-16106_2024-04-05_02-40-34/problem_statement.txt Shows the SymPy version and imports necessary for the example. This is setup code. ```python sympy.__version__ from sympy.abc import (a, b) ``` -------------------------------- ### Make History Example Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/scripts/replay/README.md Example of using the replay script to create a conversation history from a directory of expressions. ```bash > python scripts/replay/replay.py -m results/acr-run-1/applicable_patch/django__django-11001_2024-04-06_13-25-06/ Using main conversation: results/acr-run-1/applicable_patch/django__django-11001_2024-04-06_13-25-06/conversation_round_4.json Using patch agent conversation results/acr-run-1/applicable_patch/django__django-11001_2024-04-06_13-25-06/debug_agent_write_patch_1.json History extracted successfully: results/acr-run-1/applicable_patch/django__django-11001_2024-04-06_13-25-06/history.json ``` -------------------------------- ### Example of User-Friendly Usage Tip Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/pylint-dev__pylint-6506_2024-04-06_13-57-26/problem_statement.txt This example from mypy shows the expected user-friendly output for an unrecognized argument, including a usage tip. ```python mypy -Q usage: mypy [-h] [-v] [-V] [more options; see below] [-m MODULE] [-p PACKAGE] [-c PROGRAM_TEXT] [files ...] mypy: error: unrecognized arguments: -Q ``` -------------------------------- ### Sphinx Option Directive Example Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/sphinx-doc__sphinx-8506_2024-04-06_13-37-30/problem_statement.txt This is an example of the 'option::' directive used in QEMU documentation. Sphinx 3.2 now flags this syntax as malformed. ```rst .. option:: [enable=]PATTERN Immediately enable events matching *PATTERN* ``` -------------------------------- ### Sphinx option:: Directive Example Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-2/applicable_patch/sphinx-doc__sphinx-8506_2024-04-04_14-24-47/problem_statement.txt This is an example of the `option::` directive used in QEMU documentation. Sphinx 3.2 now flags this syntax as malformed. ```rst .. option:: [enable=]PATTERN Immediately enable events matching *PATTERN* ``` -------------------------------- ### Start Docker Container Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/EXPERIMENT.md Starts an interactive Docker container for the experiment. This command launches a new container from the pulled image. ```bash docker run -it yuntongzhang/auto-code-rover:experiment ``` -------------------------------- ### Install SWE-bench Docker Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/README.md Installs the SWE-bench Docker fork and its dependencies. Ensure you activate the 'auto-code-rover' conda environment before running. ```bash conda activate auto-code-rover git submodule update --init --recursive cd SWE-bench-docker pip install . ``` -------------------------------- ### Database Router Example Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/django__django-15252_2024-04-06_12-52-23/problem_statement.txt A simple database router that allows migrations only on the 'default' database. ```python class Router(object): def allow_migrate(self, db, model): if db == 'default': return True return False ``` -------------------------------- ### Replay History Example Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/scripts/replay/README.md Example of using the replay script to replay a previously generated JSON conversation history. ```bash > python scripts/replay/replay.py -r results/acr-run-1/applicable_patch/django__django-11001_2024-04-06_13-25-06/history.json ``` -------------------------------- ### Run AutoCodeRover on GitHub Issue (Langchain Example) Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/README.md Example command for running AutoCodeRover on a specific issue from the langchain GitHub issue tracker, demonstrating the use of all required parameters. ```bash PYTHONPATH=. python app/main.py github-issue --output-dir output --setup-dir setup --model gpt-4o-2024-05-13 --model-temperature 0.2 --task-id langchain-20453 --clone-link https://github.com/langchain-ai/langchain.git --commit-hash cb6e5e5 --issue-link https://github.com/langchain-ai/langchain/issues/20453 ``` -------------------------------- ### QDP File Content Example Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/astropy__astropy-14365_2024-04-06_13-27-09/problem_statement.txt This is an example of a QDP file with lowercase commands that causes issues with Astropy's ascii.qdp reader. ```text read serr 1 2 1 0.5 1 0.5 ``` -------------------------------- ### Example QDP file content Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-3/raw_patch_but_unmatched/astropy__astropy-14365_2024-04-04_19-23-31/problem_statement.txt This is an example of a QDP file content that is expected to be read into a Table with errors, rather than causing the program to crash due to case sensitivity. ```qdp read serr 1 2 1 0.5 1 0.5 ``` -------------------------------- ### Install Tox with Conda Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/TESTING.md Configure conda channels and install the Tox tool within the activated environment. ```bash conda config --add channels conda-forge conda config --set channel_priority flexible conda install -y tox ``` -------------------------------- ### Django Settings Example Configuration Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/django__django-12700_2024-04-06_13-42-57/problem_statement.txt This is an example of a Django setting that includes nested dictionaries and lists, which was found to be insufficiently cleaned. ```python MY_SETTING = { "foo": "value", "secret": "value", "token": "value", "something": [ {"foo": "value"}, {"secret": "value"}, {"token": "value"}, ], "else": [ [ {"foo": "value"}, {"secret": "value"}, {"token": "value"}, ], [ {"foo": "value"}, {"secret": "value"}, {"token": "value"}, ] ] } ``` -------------------------------- ### Pytest Installation and Usage Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-val-only/applicable_patch/pytest-dev__pytest-11143_2024-04-05_05-30-40/problem_statement.txt This section lists installed packages and demonstrates how to run Pytest with a specific marker to trigger the bug. Use `pytest -k xxx` to reproduce the error. ```bash pip list ``` Installing collected packages: zipp, six, PyYAML, python-dateutil, MarkupSafe, importlib-metadata, watchdog, tomli, soupsieve, pyyaml-env-tag, pycparser, pluggy, packaging, mergedeep, Markdown, jinja2, iniconfig, ghp-import, exceptiongroup, click, websockets, urllib3, tqdm, smmap, pytest, pyee, mkdocs, lxml, importlib-resources, idna, cssselect, charset-normalizer, cffi, certifi, beautifulsoup4, attrs, appdirs, w3lib, typing-extensions, texttable, requests, pyzstd, pytest-metadata, pyquery, pyppmd, pyppeteer, pynacl, pymdown-extensions, pycryptodomex, pybcj, pyasn1, py, psutil, parse, multivolumefile, mkdocs-autorefs, inflate64, gitdb, fake-useragent, cryptography, comtypes, bs4, brotli, bcrypt, allure-python-commons, xlwt, xlrd, rsa, requests-html, pywinauto, python-i18n, python-dotenv, pytest-rerunfailures, pytest-html, pytest-check, PySocks, py7zr, paramiko, mkdocstrings, loguru, GitPython, ftputil, crcmod, chardet, brotlicffi, allure-pytest Successfully installed GitPython-3.1.31 Markdown-3.3.7 MarkupSafe-2.1.3 PySocks-1.7.1 PyYAML-6.0 allure-pytest-2.13.2 allure-python-commons-2.13.2 appdirs-1.4.4 attrs-23.1.0 bcrypt-4.0.1 beautifulsoup4-4.12.2 brotli-1.0.9 brotlicffi-1.0.9.2 bs4-0.0.1 certifi-2023.5.7 cffi-1.15.1 chardet-5.1.0 charset-normalizer-3.1.0 click-8.1.3 comtypes-1.2.0 crcmod-1.7 cryptography-41.0.1 cssselect-1.2.0 exceptiongroup-1.1.1 fake-useragent-1.1.3 ftputil-5.0.4 ghp-import-2.1.0 gitdb-4.0.10 idna-3.4 importlib-metadata-6.7.0 importlib-resources-5.12.0 inflate64-0.3.1 iniconfig-2.0.0 jinja2-3.1.2 loguru-0.7.0 lxml-4.9.2 mergedeep-1.3.4 mkdocs-1.4.3 mkdocs-autorefs-0.4.1 mkdocstrings-0.22.0 multivolumefile-0.2.3 packaging-23.1 paramiko-3.2.0 parse-1.19.1 pluggy-1.2.0 psutil-5.9.5 py-1.11.0 py7zr-0.20.5 pyasn1-0.5.0 pybcj-1.0.1 pycparser-2.21 pycryptodomex-3.18.0 pyee-8.2.2 pymdown-extensions-10.0.1 pynacl-1.5.0 pyppeteer-1.0.2 pyppmd-1.0.0 pyquery-2.0.0 pytest-7.4.0 pytest-check-2.1.5 pytest-html-3.2.0 pytest-metadata-3.0.0 pytest-rerunfailures-11.1.2 python-dateutil-2.8.2 python-dotenv-1.0.0 python-i18n-0.3.9 pywinauto-0.6.6 pyyaml-env-tag-0.1 pyzstd-0.15.9 requests-2.31.0 requests-html-0.10.0 rsa-4.9 six-1.16.0 smmap-5.0.0 soupsieve-2.4.1 texttable-1.6.7 tomli-2.0.1 tqdm-4.65.0 typing-extensions-4.6.3 urllib3-1.26.16 w3lib-2.1.1 watchdog-3.0.0 websockets-10.4 xlrd-2.0.1 xlwt-1.3.0 zipp-3.15.0 ``` use `pytest -k xxx`， report an error：`TypeError: argument of type 'int' is not iterable` ``` -------------------------------- ### Improved Product Pretty Print Example Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/sympy__sympy-16281_2024-04-06_12-55-02/problem_statement.txt An example of a potentially improved pretty print format for the Product function, aiming for better visual balance and compactness. ```text ∞ ─┬─────┬─ │ │ 1 │ │ ── │ │ 2 │ │ n n = 1 ``` -------------------------------- ### Example Python File Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/sphinx-doc__sphinx-7686_2024-04-06_13-37-03/problem_statement.txt A simple Python file used for testing the autosummary functionality. ```python # example.py import os ``` -------------------------------- ### Example Log Output (Proposed Format) Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/pytest-dev__pytest-5227_2024-04-06_13-40-47/problem_statement.txt Demonstrates the log output with the proposed format, which now includes the module name, providing more detailed information. ```text DEBUG django.db.backends:utils.py:114 (0.000) SELECT "app_url"."id", "app_url"."created", "app_url"."url" FROM "app_url" WHERE "app_url"."id" = 2; args=(2,) DEBUG multipart.multipart:multipart.py:604 Calling on_field_start with no data ``` -------------------------------- ### SymPy apart() Function Usage Example Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-val-sbfl/applicable_patch/sympy__sympy-12236_2024-04-05_02-20-06/problem_statement.txt This example demonstrates the usage of the apart() function in SymPy with a symbolic expression. It includes the setup of symbolic variables and the expression itself. ```python from sympy import symbols a = symbols('a', real=True) t = symbols('t', real=True, negative=False) bug = a * (-t + (-t + 1) * (2 * t - 1)) / (2 * t - 1) bug.subs(a, 1) bug.subs(a, 1).apart() bug.subs(a, 1).apart(t) ``` -------------------------------- ### Custom Autocomplete View Example Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/django__django-14752_2024-04-06_13-26-28/problem_statement.txt Example of extending AutocompleteJsonView to include custom fields like 'notes' in the autocomplete response. This requires overriding the get() method. ```python class MyModelAdmin(admin.ModelAdmin): def get_urls(self): return [ path('autocomplete/', CustomAutocompleteJsonView.as_view(admin_site=self.admin_site)) if url.pattern.match('autocomplete/') else url for url in super().get_urls() ] class CustomAutocompleteJsonView(AutocompleteJsonView): def get(self, request, *args, **kwargs): self.term, self.model_admin, self.source_field, to_field_name = self.process_request(request) if not self.has_perm(request): raise PermissionDenied self.object_list = self.get_queryset() context = self.get_context_data() return JsonResponse({ 'results': [ {'id': str(getattr(obj, to_field_name)), 'text': str(obj), 'notes': obj.notes} # <-- customization here for obj in context['object_list'] ], 'pagination': {'more': context['page_obj'].has_next()}, }) ``` -------------------------------- ### Set up SWE-bench Tasks Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/README.md Sets up SWE-bench task instances locally using a specified task list file. This process creates a testbed environment and a conda environment for each task. ```bash cd conda activate swe-bench python harness/run_setup.py --log_dir logs --testbed testbed --result_dir setup_result --subset_file tasks.txt ``` -------------------------------- ### Run Development Server Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/demo_vis/front/README.md Use these commands to start the Next.js development server. Open http://localhost:3000 in your browser to view the application. ```bash npm run dev # or yarn dev # or pnpm dev # or bun dev ``` -------------------------------- ### Reproducing FeatureUnion Bug with Pandas Output Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/scikit-learn__scikit-learn-25747_2024-04-06_13-19-17/problem_statement.txt This code demonstrates the bug by first showing a working example with default numpy output and then the failing example with pandas output. It requires pandas and scikit-learn. Ensure pandas is installed. ```python import pandas as pd from sklearn.base import BaseEstimator, TransformerMixin from sklearn import set_config from sklearn.pipeline import make_union index = pd.date_range(start="2020-01-01", end="2020-01-05", inclusive="left", freq="H") data = pd.DataFrame(index=index, data=[10] * len(index), columns=["value"]) data["date"] = index.date class MyTransformer(BaseEstimator, TransformerMixin): def fit(self, X: pd.DataFrame, y: pd.Series | None = None, **kwargs): return self def transform(self, X: pd.DataFrame, y: pd.Series | None = None) -> pd.DataFrame: return X["value"].groupby(X["date"]).sum() # This works. set_config(transform_output="default") print(make_union(MyTransformer()).fit_transform(data)) # This does not work. set_config(transform_output="pandas") print(make_union(MyTransformer()).fit_transform(data)) ``` -------------------------------- ### Reproducing Pipeline Length Error Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/raw_patch_but_unmatched/scikit-learn__scikit-learn-13439_2024-04-06_12-36-22/problem_statement.txt This snippet demonstrates the setup of a scikit-learn Pipeline and attempts to access its length, which results in an error. It requires scikit-learn, numpy, and scipy to be installed. ```python from sklearn import svm from sklearn.datasets import samples_generator from sklearn.feature_selection import SelectKBest from sklearn.feature_selection import f_regression from sklearn.pipeline import Pipeline # generate some data to play with X, y = samples_generator.make_classification( n_informative=5, n_redundant=0, random_state=42) anova_filter = SelectKBest(f_regression, k=5) clf = svm.SVC(kernel='linear') pipe = Pipeline([('anova', anova_filter), ('svc', clf)]) len(pipe) ``` -------------------------------- ### Example Log Output (Current Format) Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/pytest-dev__pytest-5227_2024-04-06_13-40-47/problem_statement.txt Illustrates the log output generated by the current default log format, showing filename and line number. ```text utils.py 114 DEBUG (0.000) SELECT "app_url"."id", "app_url"."created", "app_url"."url" FROM "app_url" WHERE "app_url"."id" = 2; args=(2,) multipart.py 604 DEBUG Calling on_field_start with no data ``` -------------------------------- ### Matplotlib BoundaryNorm Crash Example Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/matplotlib__matplotlib-22835_2024-04-06_12-32-59/problem_statement.txt This code demonstrates the setup that triggers a crash in Matplotlib 3.5.0 when using BoundaryNorm with image display and cursor interaction. The crash occurs due to BoundaryNorm not being invertible. ```python import matplotlib.pyplot as plt import numpy as np import matplotlib as mpl fig, ax = plt.subplots() norm = mpl.colors.BoundaryNorm(np.linspace(-4, 4, 5), 256) X = np.random.randn(10, 10) pc = ax.imshow(X, cmap='RdBu_r', norm=norm) ``` -------------------------------- ### Class Method Decorated with method_decorator Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-2/applicable_patch/django__django-14787_2024-04-04_13-26-16/problem_statement.txt This example shows a class method `hello_world` decorated with Django's `method_decorator` applied to the `logger` function. This setup can lead to an `AttributeError` because `method_decorator` may not correctly handle the `functools.partial` object created by `@wraps`. ```python class Test: @method_decorator(logger) def hello_world(self): return "hello" Test().test_method() ``` -------------------------------- ### HTTP Redirection Chain Example Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/psf__requests-1963_2024-04-06_13-34-56/problem_statement.txt Illustrates a redirection chain involving 303 See Other and 307 Temporary Redirect. This scenario highlights how the intermediate 303 can change a POST request to a GET, and how Requests' redirect handling might re-issue a POST unexpectedly. ```http POST /do_something HTTP/1.1 Host: server.example.com ... HTTP/1.1 303 See Other Location: /new_thing_1513 GET /new_thing_1513 Host: server.example.com ... HTTP/1.1 307 Temporary Redirect Location: //failover.example.com/new_thing_1513 ``` -------------------------------- ### Installed Packages for Pytest Bug Reproduction Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/pytest-dev__pytest-11143_2024-04-06_13-33-23/problem_statement.txt This list of installed packages is provided to help reproduce the environment where the Pytest bug occurs. Ensure these or compatible versions are installed. ```bash Installing collected packages: zipp, six, PyYAML, python-dateutil, MarkupSafe, importlib-metadata, watchdog, tomli, soupsieve, pyyaml-env-tag, pycparser, pluggy, packaging, mergedeep, Markdown, iniconfig, ghp-import, exceptiongroup, click, websockets, urllib3, tqdm, smmap, pytest, pyee, mkdocs, lxml, importlib-resources, idna, cssselect, charset-normalizer, cffi, certifi, beautifulsoup4, attrs, appdirs, w3lib, typing-extensions, texttable, requests, pyzstd, pytest-metadata, pyquery, pyppmd, pyppeteer, pynacl, pymdown-extensions, pycryptodomex, pybcj, pyasn1, py, psutil, parse, multivolumefile, mkdocs-autorefs, inflate64, gitdb, fake-useragent, cryptography, comtypes, bs4, brotli, bcrypt, allure-python-commons, xlwt, xlrd, rsa, requests-html, pywinauto, python-i18n, python-dotenv, pytest-rerunfailures, pytest-html, pytest-check, PySocks, py7zr, paramiko, mkdocstrings, loguru, GitPython, ftputil, crcmod, chardet, brotlicffi, allure-pytest Successfully installed GitPython-3.1.31 Markdown-3.3.7 MarkupSafe-2.1.3 PySocks-1.7.1 PyYAML-6.0 allure-pytest-2.13.2 allure-python-commons-2.13.2 appdirs-1.4.4 attrs-23.1.0 bcrypt-4.0.1 beautifulsoup4-4.12.2 brotli-1.0.9 brotlicffi-1.0.9.2 bs4-0.0.1 certifi-2023.5.7 cffi-1.15.1 chardet-5.1.0 charset-normalizer-3.1.0 click-8.1.3 comtypes-1.2.0 crcmod-1.7 cryptography-41.0.1 cssselect-1.2.0 exceptiongroup-1.1.1 fake-useragent-1.1.3 ftputil-5.0.4 ghp-import-2.1.0 gitdb-4.0.10 idna-3.4 importlib-metadata-6.7.0 importlib-resources-5.12.0 inflate64-0.3.1 iniconfig-2.0.0 jinja2-3.1.2 loguru-0.7.0 lxml-4.9.2 mergedeep-1.3.4 mkdocs-1.4.3 mkdocs-autorefs-0.4.1 mkdocstrings-0.22.0 multivolumefile-0.2.3 packaging-23.1 paramiko-3.2.0 parse-1.19.1 pluggy-1.2.0 psutil-5.9.5 py-1.11.0 py7zr-0.20.5 pyasn1-0.5.0 pybcj-1.0.1 pycparser-2.2.1 pycryptodomex-3.18.0 pyee-8.2.2 pymdown-extensions-10.0.1 pynacl-1.5.0 pyppeteer-1.0.2 pyppmd-1.0.0 pyquery-2.0.0 pytest-7.4.0 pytest-check-2.1.5 pytest-html-3.2.0 pytest-metadata-3.0.0 pytest-rerunfailures-11.1.2 python-dateutil-2.8.2 python-dotenv-1.0.0 python-i18n-0.3.9 pywinauto-0.6.6 pyyaml-env-tag-0.1 pyzstd-0.15.9 requests-2.31.0 requests-html-0.10.0 rsa-4.9 six-1.16.0 smmap-5.0.0 soupsieve-2.4.1 texttable-1.6.7 tomli-2.0.1 tqdm-4.65.0 typing-extensions-4.6.3 urllib3-1.26.16 w3lib-2.1.1 watchdog-3.0.0 websockets-10.4 xlrd-2.0.1 xlwt-1.3.0 zipp-3.15.0 ``` -------------------------------- ### Create Task List File Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/README.md Creates a file named 'tasks.txt' containing SWE-bench task IDs. Use the second command for arm64 systems to avoid Python 3.6 dependency issues. ```bash cd echo django__django-11133 > tasks.txt ``` ```bash echo django__django-16041 > tasks.txt ``` -------------------------------- ### QDP File Creation Command Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-val-sbfl/applicable_patch/astropy__astropy-14365_2024-04-05_05-15-51/problem_statement.txt Command to create a test QDP file named 'test.qdp' with lowercase commands. ```bash cat > test.qdp read serr 1 2 1 0.5 1 0.5 ``` -------------------------------- ### Loaddata Fixture Handling Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/django__django-12453_2024-04-06_13-29-22/problem_statement.txt This example shows how `loaddata` correctly handles fixtures by wrapping the entire loading process within a transaction, ensuring data integrity. ```python with transaction.atomic(using=self.using): self.loaddata(fixture_labels) ``` -------------------------------- ### Build and Run Docker Image Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/README.md Build the minimal Docker image for AutoCodeRover and then run it. The OPENAI_KEY environment variable is passed to the container. ```bash docker build -f Dockerfile.minimal -t acr . docker run -it -e OPENAI_KEY="${OPENAI_KEY:-OPENAI_API_KEY}" acr ``` -------------------------------- ### Sphinx Build Command Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/raw_patch_but_unmatched/sphinx-doc__sphinx-8627_2024-04-06_13-24-18/problem_statement.txt This command initiates the Sphinx documentation build process. It specifies the builder ('html'), source directory ('docs/'), output directory ('doc-out'), and enables verbose and warning-free output. ```bash python3 -m sphinx -b html docs/ doc-out -nvWT ``` -------------------------------- ### LDA Parameter Validation Example Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/scikit-learn__scikit-learn-14092_2024-04-06_12-41-52/problem_statement.txt Illustrates the current, often redundant, parameter checking implementation in scikit-learn estimators, using LDA as an example. ```python def _check_params(self): """Check model parameters.""" if self.n_components <= 0: raise ValueError("Invalid 'n_components' parameter: %r" % self.n_components) if self.total_samples <= 0: raise ValueError("Invalid 'total_samples' parameter: %r" % self.total_samples) if self.learning_offset < 0: raise ValueError("Invalid 'learning_offset' parameter: %r" % self.learning_offset) if self.learning_method not in ("batch", "online"): raise ValueError("Invalid 'learning_method' parameter: %r" % self.learning_method) ``` -------------------------------- ### Vector Pretty Printing Example Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-val-sbfl/applicable_patch/sympy__sympy-14308_2024-04-05_06-28-22/problem_statement.txt Demonstrates the pretty printing of a vector component in SymPy. This example shows the output format for a vector multiplied by a scalar. ```python from sympy.vector import * e = CoordSysCartesian('e') (x/y)**t*e.j ``` -------------------------------- ### Pytest Installation Packages Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-3/applicable_patch/pytest-dev__pytest-11143_2024-04-04_19-25-02/problem_statement.txt This is the output of `pip list` from the virtual environment where the bug was observed. It lists all installed packages and their versions, which can be useful for debugging compatibility issues. ```text Installing collected packages: zipp, six, PyYAML, python-dateutil, MarkupSafe, importlib-metadata, watchdog, tomli, soupsieve, pyyaml-env-tag, pycparser, pluggy, packaging, mergedeep, Markdown, jinja2, iniconfig, ghp-import, exceptiongroup, click, websockets, urllib3, tqdm, smmap, pytest, pyee, mkdocs, lxml, importlib-resources, idna, cssselect, charset-normalizer, cffi, certifi, beautifulsoup4, attrs, appdirs, w3lib, typing-extensions, texttable, requests, pyzstd, pytest-metadata, pyquery, pyppmd, pyppeteer, pynacl, pymdown-extensions, pycryptodomex, pybcj, pyasn1, py, psutil, parse, multivolumefile, mkdocs-autorefs, inflate64, gitdb, fake-useragent, cryptography, comtypes, bs4, brotli, bcrypt, allure-python-commons, xlwt, xlrd, rsa, requests-html, pywinauto, python-i18n, python-dotenv, pytest-rerunfailures, pytest-html, pytest-check, PySocks, py7zr, paramiko, mkdocstrings, loguru, GitPython, ftputil, crcmod, chardet, brotlicffi, allure-pytest Successfully installed GitPython-3.1.31 Markdown-3.3.7 MarkupSafe-2.1.3 PySocks-1.7.1 PyYAML-6.0 allure-pytest-2.13.2 allure-python-commons-2.13.2 appdirs-1.4.4 attrs-23.1.0 bcrypt-4.0.1 beautifulsoup4-4.12.2 brotli-1.0.9 brotlicffi-1.0.9.2 bs4-0.0.1 certifi-2023.5.7 cffi-1.15.1 chardet-5.1.0 charset-normalizer-3.1.0 click-8.1.3 comtypes-1.2.0 crcmod-1.7 cryptography-41.0.1 cssselect-1.2.0 exceptiongroup-1.1.1 fake-useragent-1.1.3 ftputil-5.0.4 ghp-import-2.1.0 gitdb-4.0.10 idna-3.4 importlib-metadata-6.7.0 importlib-resources-5.12.0 inflate64-0.3.1 iniconfig-2.0.0 jinja2-3.1.2 loguru-0.7.0 lxml-4.9.2 mergedeep-1.3.4 mkdocs-1.4.3 mkdocs-autorefs-0.4.1 mkdocstrings-0.22.0 multivolumefile-0.2.3 packaging-23.1 paramiko-3.2.0 parse-1.19.1 pluggy-1.2.0 psutil-5.9.5 py-1.11.0 py7zr-0.20.5 pyasn1-0.5.0 pybcj-1.0.1 pycparser-2.21 pycryptodomex-3.18.0 pyee-8.2.2 pymdown-extensions-10.0.1 pynacl-1.5.0 pyppeteer-1.0.2 pyppmd-1.0.0 pyquery-2.0.0 pytest-7.4.0 pytest-check-2.1.5 pytest-html-3.2.0 pytest-metadata-3.0.0 pytest-rerunfailures-11.1.2 python-dateutil-2.8.2 python-dotenv-1.0.0 python-i18n-0.3.9 pywinauto-0.6.6 pyyaml-env-tag-0.1 pyzstd-0.15.9 requests-2.31.0 requests-html-0.10.0 rsa-4.9 six-1.16.0 smmap-5.0.0 soupsieve-2.4.1 texttable-1.6.7 tomli-2.0.1 tqdm-4.65.0 typing-extensions-4.6.3 urllib3-1.26.16 w3lib-2.1.1 watchdog-3.0.0 websockets-10.4 xlrd-2.0.1 xlwt-1.3.0 zipp-3.15.0 ``` -------------------------------- ### Pytest JUnit XML Report Example Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/raw_patch_but_unmatched/pytest-dev__pytest-5692_2024-04-06_13-59-10/problem_statement.txt This is an example of a JUnit XML report generated by pytest. Note the absence of 'hostname' and 'timestamp' attributes in the testsuite element. ```xml ``` -------------------------------- ### Run Experiment on SWE-bench-lite Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/EXPERIMENT.md Executes the main experiment script using a specified configuration file. This command initiates the auto-code-rover process on SWE-bench-lite instances. ```bash python scripts/run.py conf/vanilla-lite.conf ``` -------------------------------- ### Expected Help Output After Fix Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-3/raw_patch_but_unmatched/django__django-15781_2024-04-04_19-00-27/problem_statement.txt Illustrates the desired help output for a management command, with example usage correctly formatted on separate lines. ```bash $ ./manage.py help tzkt_import usage: manage.py tzkt_import [-h] [--api API] [--version] [-v {0,1,2,3}] [--settings SETTINGS] [--pythonpath PYTHONPATH] [--traceback] [--no-color] [--force-color] [--skip-checks] blockchain target Import a contract from tzkt Example usage: ./manage.py tzkt_import 'Tezos Mainnet' KT1HTDtMBRCKoNHjfWEEvXneGQpCfPAt6BRe positional arguments: blockchain Name of the blockchain to import into target Id of the contract to import ``` -------------------------------- ### Help Output Before Fix Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-3/raw_patch_but_unmatched/django__django-15781_2024-04-04_19-00-27/problem_statement.txt Shows the help output for a management command where the example usage is not formatted as a distinct block. ```bash $ ./manage.py help tzkt_import usage: manage.py tzkt_import [-h] [--api API] [--version] [-v {0,1,2,3}] [--settings SETTINGS] [--pythonpath PYTHONPATH] [--traceback] [--no-color] [--force-color] [--skip-checks] blockchain target Import a contract from tzkt Example usage: ./manage.py tzkt_import 'Tezos Mainnet' KT1HTDtMBRCKoNHjfWEEvXneGQpCfPAt6BRe positional arguments: blockchain Name of the blockchain to import into target Id of the contract to import ``` -------------------------------- ### Working lambdify examples in SymPy Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/results/acr-run-1/applicable_patch/sympy__sympy-15011_2024-04-06_13-58-39/problem_statement.txt Demonstrates successful usage of `lambdify` with a scalar symbol containing curly braces and a standard `MatrixSymbol`. These examples work correctly. ```python curlyScalarId = sy.lambdify(curlyx, curlyx) vectorId = sy.lambdify(v,v) ``` -------------------------------- ### Run with Configuration File Source: https://github.com/autocoderoversg/auto-code-rover/blob/main/README.md Executes Auto Code Rover using a configuration file to specify parameters and tasks. Refer to 'conf/example.conf' for an example configuration. ```bash python scripts/run.py conf/example.conf ```